Omschrijving
Offers a review of the most current methodologies of constructing constrained helices. PART I OVERVIEWS
1.1 Protein-protein interactions
1.1.1 Function
1.1.2 Structural basis and features
1.1.3 Targeting PPIs by small molecules
1.2 Peptides as molecular tools
1.2.1 Advantages
1.2.2 Disadvantages
1.3 Helical structures
1.3.1 Classification
1.3.2 Function
1.3.3 Characterization
1.4 Stabilization of helices via cyclization
1.4.1 Classification
1.4.2 Overview
PART II CONSTRUCTION OF CONSTRAINED HELICES
2.1 Side-chain crosslinking
(History, chemistry, features and limitations)
2.1.1 Disulfide bond
I+3, i+7, conotoxin
2.1.2 Amide or ester
2.1.3 All-hydrocarbon
I+4/3/7, stitched peptide, de alpha methylation, reduced, Moore
2.1.4 Thiol ether
I+3, Woolley, Heinis, Lin, DeGrado, Pentelute, Smith, Chou, Dawson, Li
2.1.5 Azole
Chorev, Spring, Arora
2.2 End nucleation
2.2.1 Hydrazone
2.2.2 All-hydrocarbon
Arora, Alewood
2.2.3 Disulfide bond
2.2.4 Thiol ether
2.2.5 Amide
PART III EFFECTS OF CYCLIZATION ON HELICES
3.1 Helicity
3.1.1 Ring size
3.1.2 Rigidity (alpha methylation, double bond, Z/E)
3.1.3 Substitution (chirality, group size)
3.1.4 Comparison
3.2 Binding affinity
3.2.1 Helicity
3.2.2 Cyclization position
3.2.3 Substitution
3.3 Cell permeability
3.3.1 Helicity
3.3.2 Hydrophobicity
3.3.3 Isoelectric point
3.4 Nonspecific toxicity
3.3.1 Helicity
3.3.2 Hydrophobicity
3.3.3 Isoelectric point
PART IV APPLICATIONS OF CONSTRAINED HELICES
(physiology and pathology of the target, small molecules/antibodies, structural basis, peptide modulators)
4.1 Cancer
ER, BCL-2, MDM2/X, HIF, NOTCH, RAS, beta-catenin, IRS1, Rab, EGFR, KRAS
4.2 Infectious Disease
HIV, bacteria, RSV
4.3 Nervous system disease
NMDA, Galanin, Neuropeptide Y
4.4 Respiratory system disease
Interleukin 13
PART V OUTLOOK
5.1 Methodology development
5.2 Applications